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Bose-Einstein-Kondensat<a href="https://mstdn.social/tags/OpenSource" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#OpenSource</a> multicolor <a href="https://mstdn.social/tags/3Dprinted" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#3Dprinted</a> <a href="https://mstdn.social/tags/molecular" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#molecular</a> <a href="https://mstdn.social/tags/orbital" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#orbital</a> models for a 1st semester organic <a href="https://mstdn.social/tags/chemistry" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#chemistry</a> course:- <a href="https://mstdn.social/tags/classroom" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#classroom</a>-acessible MO theory - transition state understanding - <a href="https://mstdn.social/tags/PyMOL" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#PyMOL</a>- / <a href="https://mstdn.social/tags/Blender" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Blender</a>-exported .stl files<a href="https://doi.org/10.1021/acs.jchemed.4c00945" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://doi.org/10.1021/acs.jchemed.4c00945</a> <a href="https://mstdn.social/tags/DIYchem" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#DIYchem</a> <a href="https://mstdn.social/tags/lab" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#lab</a> <a href="https://mstdn.social/tags/tools" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#tools</a> <a href="https://mstdn.social/tags/education" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#education</a> <a href="https://mstdn.social/tags/CompChem" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#CompChem</a> <a href="https://mstdn.social/tags/STEM" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#STEM</a> <a href="https://mstdn.social/tags/Chemie" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Chemie</a> <a href="https://mstdn.social/tags/Schule" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Schule</a> <a href="https://mstdn.social/tags/MINT" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#MINT</a>

Luis FalconSlide from my talk "Open Science for Medicine and Society" at Komazawa university. Using GNU Health to select a BRCA1 variant involved in breast <a href="https://todon.eu/tags/cancer" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#cancer</a> and the 3D representation of the BRCT domain using PyMOL. Having access to the latest scientific evidence makes a huge difference in patients, yet medical research is being dismantled by <a href="https://todon.eu/tags/corporatocracy" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#corporatocracy</a>. Medicine and society evolves not because of the bullshit hype of AI, but because of the effort and talent of the men and women behind these projects. Respect :anarchoheart3: 🩺 <a href="https://todon.eu/tags/UniProt" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#UniProt</a> <a href="https://todon.eu/tags/HUGO" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#HUGO</a> <a href="https://todon.eu/tags/GNUHealth" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#GNUHealth</a> <a href="https://todon.eu/tags/PyMOL" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#PyMOL</a> <a href="https://todon.eu/tags/NIH" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#NIH</a> <a href="https://todon.eu/tags/genomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#genomics</a> <a href="https://todon.eu/tags/OpenScience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#OpenScience</a>

BeneHelp! I need to make a pretty image from a protein. Being old-school, I would use <a href="https://scholar.social/tags/pymol" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#pymol</a>. However, is there new stuff out there that 200-year old me doesn't know? Preferably, its <a href="https://scholar.social/tags/opensource" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#opensource</a> or, if not, the license doesn't come at the price of a kidney.<a href="https://scholar.social/tags/molecular_graphics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#molecular_graphics</a> <a href="https://mastodon.social/@helenajambor" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@helenajambor</a>

Cowboy Cat RanchHaven't found a solution to the problem yet. You'd expect something so simple shouldn't be that difficult to find.Is there a way for me to manually rotate these molecules and align them? I can align them in PyMol, but the alignment is not done how I want it done. When I open both, select A, rotate A into the desired position, then select B, and rotate B, A has changed orientation. Anybody any suggestions for manual alignment of small molecules?<a href="https://mastodon.online/tags/PyMol" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#PyMol</a> <a href="https://mastodon.online/tags/chemistry" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#chemistry</a> <a href="https://mastodon.online/tags/smallmolecules" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#smallmolecules</a> <a href="https://mastodon.online/tags/ligands" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ligands</a>

Andrew Plested<a href="https://mastodon.online/@cowboycatranch" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@cowboycatranch</a> <a href="https://mastodon.online/@SRDas" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@SRDas</a> This is a guess, but could it be the difference between model space and camera space?<a href="https://www.pymolwiki.org/index.php/Model_Space_and_Camera_Space" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://www.pymolwiki.org/index.php/Model_Space_and_Camera_Space</a><a href="https://mstdn.science/tags/pymol" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#pymol</a> <a href="https://mstdn.science/tags/molecules" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#molecules</a>

Cowboy Cat RanchIs there a way for me to manually rotate these molecules and align them? I can align them in PyMol, but the alignment is not done how I want it done. When I open both, select A, rotate A into the desired position, then select B, and rotate B, A has changed orientation. Anybody any suggestions for manual alignment of small molecules?<a href="https://mastodon.online/tags/PyMol" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#PyMol</a> <a href="https://mastodon.online/tags/chemistry" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#chemistry</a> <a href="https://mastodon.online/tags/smallmolecules" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#smallmolecules</a>

FolmerThe innophore teams CavitOmiX for your <a href="https://mastodon.social/tags/PyMol" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#PyMol</a> cavities <a href="https://mastodon.social/tags/StructuralBiology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#StructuralBiology</a> <a href="https://a.gup.pe/u/structbio" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@structbio</a> <a href="https://mastodon.social/tags/proteinstructureandfunction" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#proteinstructureandfunction</a> <a href="https://mastodon.social/tags/enzymeengineering" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#enzymeengineering</a> <a href="https://pymolwiki.org/index.php/CavitOmiX" rel="nofollow noopener noreferrer" target="_blank">https://pymolwiki.org/index.php/CavitOmiX</a>

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